After some research it only occurs if the connector is installed on the same site as Portal.
It is actually due to mysql provider adding a sitemap in machine.config in their later versions.
To solve this i have added:
<remove name=”MySqlSiteMapProvider” />
in between the <providers> tags to the Portal web.config which seems to resolve the issue
You guys can do it for a temp fix or simply wait untill our latest stable goes live end this month.
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